BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002D06SP1|AL424955
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig353 1111 0.0
>3x_Contig353
Length = 1611
Score = 1111 bits (553), Expect = 0.0
Identities = 615/635 (96%), Gaps = 6/635 (0%)
Strand = Plus / Minus
Query: 331 gcttctttgtttatatcaatgcatcmtttattattattctgtgatttatgttccattttt 390
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1599 gcttctttgtttatatcaatgcatcctttattattattctgtgatttatgttccattttt 1540
Query: 391 cacttatggaacaatcgaaatttgctatctctgcgaatttatatcgagaaacggttagaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cacttatggaacaatcgaaatttgctatctctgcgaatttatatcgagaaacggttagaa 1480
Query: 451 acggctgtacaagaaagcaaggaaaccagggtgtttgcttcgagacagaaaggagtagac 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 acggctgtacaagaaagcaaggaaaccagggtgtttgcttcgagacagaaaggagtagac 1420
Query: 511 gcaatatgggacctgattcaaaatagcagtctgttgcaaaggacattcagacaggtttac 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 gcaatatgggacctgattcaaaatagcagtctgttgcaaaggacattcagacaggtttac 1360
Query: 571 gatggacaagtttaccaggtaagggtacgatgttttggtccgttcggaatatgaacgcac 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 gatggacaagtttaccaggtaagggtacgatgttttggtccgttcggaatatgaacgcac 1300
Query: 631 acaagatatatatgtatgtatacagctcacgtgattatttataaaccacgtgacacagac 690
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1299 acaagatatatatgtatgtatacag-tcacgtgattatttataaaccacgtgacacagac 1241
Query: 691 caaatcacatttggggctgtcatcaacgacgtacaaagtgatgaattctctctccaactc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 caaatcacatttggggctgtcatcaacgacgtacaaagtgatgaattctctctccaactc 1181
Query: 751 actcagctcaattacgcgtgccactggcctcgaaacgtgtgatgttcgtacttgtatcaa 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 actcagctcaattacgcgtgccactggcctcgaaacgtgtgatgttcgtacttgtatcaa 1121
Query: 811 tgmcgacctctctgags-ystcattacataactatccaaaactsaattccactystaacc 869
|| ||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 1120 tgacgacctctctgaggtcgtca-tacataactatccaaaactgaattccactcgtaacc 1062
Query: 870 gcatttcccccttctctgcttscatcaatgcasytacttttttcattccagcatgcataa 929
||||||||||||||||| ||| ||||||| | |||||||||||||||||||| ||||
Sbjct: 1061 gcatttcccccttctct-cttggatcaatggagtcacttttttcattccagcatg-ataa 1004
Query: 930 ttctcaacatcaaaattatataagtatgaaaaaaa 964
|| ||||||||||||||||||||||||||||||||
Sbjct: 1003 tt-tcaacatcaaaattatataagtatgaaaaaaa 970
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.714 1.32
Gapped
Lambda K H
1.39 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6476
Number of Sequences: 1807
Number of extensions: 6476
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (101.0 bits)